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About
System requirements
Getting started
DataViewer app
Data Import
Data processing
Basic data exploration
umIToolbox app
Start a project
Creating a new project file
Experiment data management
Data processing
Data exploration
Group data and visualize
Documentation
Apps
DataViewer
ROImanager
umIToolbox
Tools
Pipeline Configuration
Events manager
Multi-plot tool
Manual image registration
Line/Box plot
Correlation Matrix plot
Plot Average Maps
Merge recordings
Functions
Data import & export
run_ImagesClassification
importFromTif
getEvents
getEventsFromCSV
run_ConvertToTiff
Filters
GSR
apply_aggregate_function
spatialGaussFilt
normalizeBSLN
normalizeLPF
normalizeZScore
Imaging
SPCM
alignFrames
apply_detrend
calculate_response_amplitude
genRetinotopyMaps
genVSM
run_Ana_Speckle
run_HemoCompute
run_HemoCorrection
run_SpeckleMapping
split_data_by_event
trim_movie
Analysis functions
calculateResponseFeatures
genCorrelationMatrix
getDataFromROI
transformDat2Mat
Advanced User Resources
Batch processing
Creating custom functions (umIToolbox)
Events file
Organization of .dat files
Organization of .mat files
ROImanager data organization
Setting up cameras and filters spectra
Statistical analysis
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Documentation
Functions
Filters
Filters
Table of contents
Global Signal Regression(GSR)
Aggregate function (apply_aggregate_function)
Spatial Gaussian Filter (spatialGaussFilt)
Baseline normalization (normalizeBSLN)
Low pass filter normalization (normalizeLPF)
Z-score normalization (normalizeZScore)